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Publications

2021

Science

Rich MK, Vigneron N, Libourel C, Keller J, Xue L, Hajheidari M, Radhakrishnan GV, Le Ru A, Diop SI, Potente G, Conti E, Duijsings D, Batut A, Le Faouder P, Kodama K, Kyozuka J, Sallet E, Bécard G, Rodriguez-Franco M, Ott T, Bertrand-Michel J, Oldroyd GED, Szövényi P, Bucher M, Delaux PM. (2021) Lipid exchanges drove the evolution of mutualism during plant terrestrialization. Science 2021 May 21;372(6544):864-868 10.1126/science.abg0929

Science

Suyu Jiang , Marie-Françoise Jardinaud , Jinpeng Gao, Yann Pecrix , Jiangqi Wen , Kirankumar Mysore, Ping Xu , Carmen Sanchez-Canizares, Yiting Ruan, Qiujiu Li , Meijun Zhu, Fuyu Li , Ertao Wang , Phillip S Poole , Pascal Gamas , Jeremy D Murray (2021) NIN-like protein transcription factors regulate leghemoglobin genes in legume nodules Science 28 Oct 2021 - Vol 374, Issue 6567 - pp. 625-628 10.1126/science.abg5945

Trends in Plant Science

Léo Gerlin, Caroline Baroukh, Stéphane Genin (2021) Polyamines: double agents in disease and plant immunity Trends in Plant Science Volume 26, Issue 10, October 2021, Pages 1061-1071 10.1016/j.tplants.2021.05.007

Nat Commun

Xia Y, Zou R, Escouboué M, Zhong L, Zhu C, Pouzet C, Wu X, Wang Y, Lv G, Zhou H, Sun P, Ding K, Deslandes L, Yuan S, Zhang ZM. (2021) Secondary-structure switch regulates the substrate binding of a YopJ family acetyltransferase. Nat Commun. Oct 13;12(1):5969. 10.1038/s41467-021-26183-1

Mol Biol Evol

Gopalan-Nair R, Jardinaud MF, Legrand L, Landry D, Barlet X, Lopez-Roques C, Vandecasteele C, Bouchez O, Genin S, Guidot A. (2021) Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of Ralstonia solanacearum on Resistant Tomato Mol Biol Evol May 4;38(5):1792-1808 10.1093/molbev/msaa320

Nat Commun

Flaugnatti N, Isaac S, Lemos Rocha LF, Stutzmann S, Rendueles O, Stoudmann C, Vesel N, Garcia-Garcera M, Buffet A, Sana TG, Rocha EPC, Blokesch M. (2021) Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms Nat Commun Oct 1;12(1):5751 10.1038/s41467-021-26041-0

Nat Commun

Groppi A, Liu S, Cornille A, Decroocq S, Bui QT, Tricon D, Cruaud C, Arribat S, Belser C, Marande W, Salse J, Huneau C, Rodde N, Rhalloussi W, Cauet S, Istace B, Denis E, Carrère S, Audergon JM, Roch G, Lambert P, Zhebentyayeva T, Liu WS, Bouchez O, Lopez-Roques C, Serre RF, Debuchy R, Tran J, Wincker P, Chen X, Pétriacq P, Barre A, Nikolski M, Aury JM, Abbott AG, Giraud T, Decroocq V. (2021) Population genomics of apricots unravels domestication history and adaptive events Nat Commun Jun 25;12(1):3956 10.1038/s41467-021-24283-6

Curr Biol

Danneels B, Viruel J, Mcgrath K, Janssens SB, Wales N, Wilkin P, Carlier A. (2021) Patterns of transmission and horizontal gene transfer in the Dioscorea sansibarensis leaf symbiosis revealed by whole-genome sequencing Curr Biol Jun 21;31(12):2666-2673.e4. Epub 2021 Apr 13. 10.1016/j.cub.2021.03.049

New Phytol.

Desaint H, Aoun N, Deslandes L, Vailleau F, Roux F, Berthomé R. (2021) Fight hard or  die trying: when plants face pathogens under heat stress. New Phytol. 2021 Jan;229(2):712-734 Epub 2020 Nov 28 10.1111/nph.16965

New Phytol.

Shrestha A, Zhong S, Therrien J, Huebert T, Sato S, Mun T, Andersen SU,

 Stougaard J, Lepage A, Niebel A, Ross L, Szczyglowski K. (2021) Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling. New Phytol. 2021 Feb;229(3):1535-1552 Epub 2020 Nov 2 10.1111/nph.16950

Plant Biotechnol J.

Du D, Zhang C, Xing Y, Lu X, Cai L, Yun H, Zhang Q, Zhang Y, Chen X, Liu M,

 Sang X, Ling Y, Yang Z, Li Y, Lefebvre B, He G. (2021) The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19. Plant Biotechnol J. 2021 May;19(5):1052-1064 Epub 2021 Jan 17 10.1111/pbi.13530

Current Opinion in Biotechnology

Gourion B, Ratet P (2021) Avoidance of detrimental defense responses in beneficial plant–microbe interactions Current Opinion in Biotechnology Volume 70, August 2021, Pages 266-272 doi.org/10.1016/j.copbio.2021.06.008

Current Opinion in Biotechnology

Joy Bergelson, Benjamin Brachi, Fabrice Roux, FabienneVailleau (2021) Assessing the potential to harness the microbiome through plant genetics Current Opinion in Biotechnology Volume 70, August 2021, Pages 167-173 10.1016/j.copbio.2021.05.007

Molecular Plant Pathology 

Julien S. Luneau, Aude Cerutti, Brice Roux, Sébastien Carrère, Marie-Françoise Jardinaud, Antoine Gaillac, Carine Gris, Emmanuelle Lauber, Richard Berthomé, Matthieu Arlat, Alice Boulanger, Laurent D. Noël, (2021) Xanthomonas transcriptome inside cauliflower hydathodes reveals bacterial virulence strategies and physiological adaptations at early infection stages. Molecular Plant Pathology. 26 November 2021 Volume 23, Issue 2 p. 159-174 10.1111/mpp.13117

J Exp Bot

Ghosh R, Barbacci A, Leblanc-Fournier N. (2021) Mechanostimulation: a promising  alternative for sustainable agriculture practices J Exp Bot 2021 Apr 2;72(8):2877-2888 10.1093/jxb/erab036

J Exp Bot

Maxime Bonhomme, Sandra Bensmihen, Olivier André, Emilie Amblard, Magali Garcia, Fabienne Maillet, Virginie Puech-Pagès, Clare Gough, Sébastien Fort, Sylvain Cottaz, Guillaume Bécard, Christophe Jacquet (2021) Distinct genetic basis for root responses to lipo-chitooligosaccharide signal molecules from different microbial origins J Exp Bot 2021 May 4;72(10):3821-3834 10.1093/jxb/erab096

Molecular Plant Pathology 

Demirjian, C.*, N. Razavi*, H. Desaint, F. Lonjon, S. Génin, F. Roux, R. Berthomé* and F. Vailleau* (*Authors contributed equally to this work) (2021) Study of natural diversity in response to a key pathogenicity regulator of Ralstonia solanacearum reveals new susceptible genes in Arabidopsis thaliana Molecular Plant Pathology 23(3):321-338 10.1111/mpp.13135

Biochem Soc Trans

Ruiz B, Frostegård Å, Bruand C, Meilhoc E. (2021) Rhizobia: highways to NO Biochem Soc Trans 2021 Feb 26;49(1):495-505 10.1042/BST20200989

mSystems

Nicoud Q, Lamouche F, Chaumeret A, Balliau T, Le Bars R, Bourge M, Pierre F,

 Guérard F, Sallet E, Tuffigo S, Pierre O, Dessaux Y, Gilard F, Gakière B, Nagy

 I, Kereszt A, Zivy M, Mergaert P, Gourion B, Alunni B. (2021) Bradyrhizobium diazoefficiens USDA110 Nodulation of Aeschynomene afraspera Is Associated with Atypical Terminal Bacteroid Differentiation and Suboptimal Symbiotic Efficiency. mSystems 2021 May 11;6(3):e01237-20 10.1128/mSystems.01237-20

The Plant Journal

Delplace, F., C. Huard-Chauveau, R. Berthomé* and D. Roby* (*Authors contributed equally to this work) (2021) Network organization of the plant immune system: from pathogen perception to robust defense induction The Plant Journal 109(2):447-470 10.1111/tpj.15462

Front Plant Sci

Kammoun B, Journet EP, Justes E, Bedoussac L. (2021) Cultivar Grain Yield in Durum Wheat-Grain Legume Intercrops Could Be Estimated From Sole Crop Yields and Interspecific Interaction Index Front Plant Sci Oct 14;12:733705. eCollection 2021. doi: 10.3389/fpls.2021.733705.

Front. Plant Sci.

Subrahmaniam HJ, Roby D, Roux F (2021) Toward Unifying Evolutionary Ecology and Genomics to Understand Positive Plant–Plant Interactions Within Wild Species Front. Plant Sci. 09 July 2021 10.3389/fpls.2021.683373

Front. Plant Sci.

Cyril Libourel, Etienne Baron, Juliana Lenglet, Laurent Amsellem, Dominique Roby and Fabrice Roux (2021) The Genomic Architecture of Competitive Response of Arabidopsis thaliana Is Highly Flexible Among Plurispecific Neighborhoods Front. Plant Sci. 25 November 2021 10.3389/fpls.2021.741122

Molecular Plant Pathology 

Ibrahim HMM, Kusch S, Didelon M, Raffaele S. (2021) Genome-wide alternative splicing profiling in the fungal plant pathogen Sclerotinia sclerotiorum during the colonization of diverse host families. Mol Plant Pathol. 2021 Jan;22(1):31-47. Epub 2020 Oct 28. 10.1111/mpp.13006

Environmental Microbiology

Qi SS, Bogdanov A, Cnockaert M, Acar T, Ranty-Roby S, Coenye T, Vandamme P, König GM, Crüsemann M, Carlier A. (2021) Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria Environ Microbiol Apr;23(4):2132-2151. 

Epub 2021 Jan 12. 10.1111/1462-2920.15382

Environmental Microbiology

Léo Gerlin, Antoine Escourrou, Cédric Cassan, Felicià Maviane Macia, Nemo Peeters, Stéphane Genin, Caroline Baroukh (2021) Unravelling physiological signatures of tomato bacterial wilt and xylem metabolites exploited by Ralstonia solanacearum Environmental Microbiology Volume 23, Issue 10 p. 5962-5978 10.1111/1462-2920.15535

Theor Appl Genet.

Fernández-Aparicio M, Del Moral L, Muños S, Velasco L, Pérez-Vich B. (2021) Genetic and physiological characterization of sunflower resistance provided by the wild derived gene against highly virulent races of Orobanche Cumana Wallr. Theor Appl Genet. 44871 10.1007/s00122-021-03979-9

Plant Methods

A Le Ru, G Ibarcq, M- C Boniface, A Baussart, S Muños, M Chabaud (2021) Image analysis for the automatic phenotyping of Orobanche cumana tubercles on sunflower roots Plant Methods Jul 21;17(1):80 10.1186/s13007-021-00779-6

Metabolites

Rubio B, Fernandez O, Cosson P, Berton T, Caballero M, Lion R, Roux F,

 Bergelson J, Gibon Y, Schurdi-Levraud V. (2021) Metabolic Profile Discriminates and Predicts Arabidopsis Susceptibility to Virus under Field Conditions Metabolites 2021 Apr 9;11(4):230 10.3390/metabo11040230

Plant Cell Physiol

S. Carrere, J. Verdier, P. Gamas (2021) MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula Plant Cell Physiol Nov 17;62(9):1494-1500 10.1093/pcp/pcab110

Plos Comutational Biology

Chaitanya S. Gokhale , Stefano Giaimo, Philippe Remigi (2021) Memory shapes microbial populations Plos Comutational Biology October 1, 2021, 17(10): e1009431 10.1371/journal.pcbi.1009431

Mol Plant Microbe

 Interact.

Benezech C, Le Scornet A, Gourion B. (2021) Medicago-Sinorhizobium-Ralstonia: A Model System to Investigate Pathogen-Triggered Inhibition of Nodulation. Mol Plant Microbe Interact. 2021 May;34(5):499-503 Epub 2021 May20 10.1094/MPMI-11-20-0319-SC

BMC genomics

Bengoa Luoni, Sofia A; Cenci, Alberto; Moschen, Sebastian; Nicosia, Salvador; Radonic, Laura M; Sabio, Julia; Langlade, Nicolas B; Vile, Denis; Rovere, Cecilia Vazquez; Fernandez, Paula; (2021) Genome-wide and comparative phylogenetic analysis of senescence-associated NAC transcription factors in sunflower (Helianthus annuus) BMC genomics  10.1186/s12864-021-08199-5

 Int J Syst Evol Microbiol 

Qi SS, Cnockaert M, Carlier A, Vandamme PA. (2021) Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere Int J Syst Evol Microbiol Apr;71(4). 10.1099/ijsem.0.004781.

OCL Oilseeds and fats crops and lipids

Balliau, Thierry; Duruflé, Harold; Blanchet, Nicolas; Blein-Nicolas, Melisande; Langlade, Nicolas; Zivy, Michel; (2021) Proteomic data from leaves of twenty-four sunflower genotypes under water deficit OCL Oilseeds and fats crops and lipids 10.1051/ocl/2020074 

OCL Oilseeds and fats crops and lipids

Debaeke, Philippe; Casadebaig, Pierre; Langlade, Nicolas; (2021) New challenges for sunflower ideotyping in changing environments and more ecological cropping systems OCL Oilseeds and fats crops and lipids 10.1051/ocl/2021016 

OCL Oilseeds and fats crops and lipids

Berton, Thierry; Bernillon, Stéphane; Fernandez, Olivier; Duruflé, Harold; Flandin, Amélie; Cassan, Cédric; Jacob, Daniel; Langlade, Nicolas; Gibon, Yves; Moing, Annick; (2021) Leaf metabolomic data of eight sunflower lines and their sixteen hybrids under water deficit OCL Oilseeds and fats crops and lipids  10.1051/ocl/2021029

BioRxiv

Ophélie Léger, Frédérick Garcia, Mehdi Khafif, Nathalie Leblanc-Fournier, Aroune Duclos, Vincent Tournat, Eric Badel, Marie Didelon, Aurélie Le Ru, Sylvain Raffaele, Adelin Barbacc (2021) Pathogen-derived mechanical cues regulate the spatio-temporal implementation of plant defense BioRxiv (Preprint) 2021 

CMSB: Computational Methods in Systems Biology

Kerian Thuillier,Caroline Baroukh,Alexander Bockmayr,Ludovic Cottret,Loïc Paulevé,Anne Siegel (2021) Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study CMSB: Computational Methods in Systems Biology pp 159-180

ARTICLE DE CONFERENCE International Conference on Computational Methods in Systems Biology 10.1007/978-3-030-85633-5_10

Encyclopedia of Biological Chemistry

Thibessard, Annabelle, Bertrand, Claire, Bartlett, Edward J., Doherty, Aidan J., Bruand, Claude, Leblond, Pierre and Lecointe, François. (2021) Nonhomologous End-Joining in Bacteria. In: Jez Joseph (eds.) Encyclopedia of Biological Chemistry, 3rd Edition. vol. 4, pp. 289–295. Oxford: Elsevier. CHAPITRE D'OUVRAGE 10.1016/B978-0-12-819460-7.00150-X

le Petit illustré - Regards croisés de chercheur·es, CNRS/La dépêche

Benjamin Gourion - Article de vulgarisation

L'immunité des plantes

C.Lannou, D.Roby, V.Ravigné, Mourad Hannachi, B.Moury, a obtenu le 34ème prix Roberval, catégorie enseignement supérieur. Participation D. Tremousaygue, L. Deslandes, R. Berthomé, S. Genin, S. Raffaelle, A. Barbacci. (2021) Pour des cultures résistantes aux maladies L'immunité des plantes OUVRAGE janvier 2021